gsmm package

Subpackages

• gsmm.csm package
  • Submodules
  • gsmm.csm.analyse_csm module
    • analyse_and_save_fluxes()
    • collect_sink_fluxes()
    • extract_fluxes()
    • filter_deletion_results()
    • filter_non_zero_fluxes()
    • find_common_reactions()
    • get_sink_fluxes()
    • load_models()
    • optimize_and_get_fluxes()
    • perform_single_reaction_deletion()
    • save_data_for_visualization()
    • save_filtered_reaction_deletion_results()
    • save_reaction_deletion_results()
  • gsmm.csm.build_csm module
    • assign_reaction_confidences()
    • extract_genes()
    • filter_model_by_genes()
    • load_expression_data()
    • main()
    • normalize_expression_data()
    • optimize_model()
    • read_parent_model()
    • run_model_reconstruction()
    • set_glpk_solver()
  • gsmm.csm.config module
  • gsmm.csm.visualisation module
    • filter_and_save_results()
    • load_data()
    • plot_flux_correlation_heatmap()
    • plot_flux_distribution_clustermap()
    • plot_fluxes()
    • plot_sink_flux_correlation_heatmap()
    • plot_sink_fluxes_heatmap()
  • Module contents

Module contents