Tutorials

• Building Context Specific Metabolic Models
  • Load expression data
  • Load Recon3D model from the web
  • Structure of a COBRApy SBML Model
  • Now we load Recon3D model as the parent model from which the base model will be created following gsmm library’s functions, to further reconstruct context specific models be done.
  • Running Model Reconstruction to get Context-Specific Model
  • Save the CSMs for further analysis and plots
• Analysis of Context Specific Metabolic Models
  • Define model_names with their associated paths in a dict
  • Import analysis module from gsmm
  • Get Flux related plots across Context Specific Models